PH01000490G0480's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G26460 : 2.00E-104
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000490
Strand: -
| Region | Start | End |
| gene | 226327 | 230016 |
| mRNA | 226327 | 230016 |
| exon | 226327 | 226517 |
| exon | 226579 | 226716 |
| exon | 226831 | 227037 |
| exon | 228714 | 229074 |
| exon | 229161 | 230016 |
| CDS | 226335 | 226517 |
| CDS | 226579 | 226716 |
| CDS | 226831 | 227037 |
| CDS | 228714 | 229074 |
| CDS | 229161 | 229519 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001511 | nuclear pore, nucleocytoplasmic transport, RNA processing, Ribosome_biogenesis_in_eukaryotes RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 292 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.