PH01000491G0110's details annotation
1.Annotation
ICBR annotation: growth regulator related protein, putative, expressed
Blast result AT5G64600 : 2.00E-112
Blast annotation: O-fucosyltransferase family protein
2.Location
Scaffold: PH01000491
Strand: +
| Region | Start | End |
| gene | 84905 | 90475 |
| mRNA | 84905 | 90475 |
| exon | 84905 | 85831 |
| exon | 86773 | 86794 |
| exon | 86974 | 87068 |
| exon | 87349 | 87437 |
| exon | 87527 | 87590 |
| exon | 87811 | 87899 |
| exon | 87989 | 88166 |
| exon | 88991 | 89124 |
| exon | 89204 | 89408 |
| exon | 89499 | 89683 |
| exon | 90083 | 90135 |
| exon | 90222 | 90475 |
| CDS | 85580 | 85831 |
| CDS | 86773 | 86794 |
| CDS | 86974 | 87068 |
| CDS | 87349 | 87437 |
| CDS | 87527 | 87590 |
| CDS | 87811 | 87899 |
| CDS | 87989 | 88166 |
| CDS | 88991 | 89124 |
| CDS | 89204 | 89408 |
| CDS | 89499 | 89683 |
| CDS | 90083 | 90135 |
| CDS | 90222 | 90328 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10250.8 | O-FucT | 108 | 175 |
| PF10250.8 | O-FucT | 263 | 427 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.