PH01000503G0190's details annotation
1.Annotation
ICBR annotation: galactosyltransferase family protein, putative, expressed
Blast result AT3G14960 : 7.00E-126
Blast annotation: Galactosyltransferase family protein
2.Location
Scaffold: PH01000503
Strand: -
| Region | Start | End |
| gene | 108986 | 116655 |
| mRNA | 108986 | 116655 |
| exon | 108986 | 109637 |
| exon | 110010 | 110152 |
| exon | 110822 | 110935 |
| exon | 114038 | 114137 |
| exon | 114220 | 114302 |
| exon | 114376 | 114528 |
| exon | 115930 | 116655 |
| CDS | 109543 | 109637 |
| CDS | 110010 | 110152 |
| CDS | 110822 | 110935 |
| CDS | 114038 | 114137 |
| CDS | 114220 | 114302 |
| CDS | 114376 | 114528 |
| CDS | 115930 | 116330 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000636 | RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) GT31 GlycosylTransferases clathrin coat of coated pit, clathrin adaptor complex, ATP biosynthetic process, ATP_catabolic_process integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT31 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01762.20 | Galactosyl_T | 116 | 309 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.