PH01000503G0690's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G55325 : 2.50E-58
Blast annotation: RNA polymerase II transcription mediators
2.Location
Scaffold: PH01000503
Strand: +
| Region | Start | End |
| gene | 433381 | 438203 |
| mRNA | 433381 | 438203 |
| exon | 433381 | 434308 |
| exon | 434542 | 434631 |
| exon | 434737 | 434876 |
| exon | 435149 | 435236 |
| exon | 435341 | 435424 |
| exon | 436287 | 436364 |
| exon | 436454 | 436533 |
| exon | 436735 | 436813 |
| exon | 437052 | 437316 |
| exon | 437428 | 437514 |
| exon | 437916 | 438203 |
| CDS | 434178 | 434308 |
| CDS | 434542 | 434631 |
| CDS | 434737 | 434876 |
| CDS | 435149 | 435236 |
| CDS | 435341 | 435424 |
| CDS | 436287 | 436364 |
| CDS | 436454 | 436533 |
| CDS | 436735 | 436813 |
| CDS | 437052 | 437316 |
| CDS | 437428 | 437514 |
| CDS | 437916 | 438035 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000942 | (1->3)-beta-D-glucan biosynthetic process, negative_regulation_of_transcription,_DNA-templated GT31 GlycosylTransferases SNF2 Transcription_Regulator(from iTAK) 1,3-beta-D-glucan synthase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.