PH01000506G0240's details annotation
1.Annotation
ICBR annotation: peptidase, putative, expressed
Blast result AT4G01320 : 0.00E+00
Blast annotation: Peptidase family M48 family protein
2.Location
Scaffold: PH01000506
Strand: +
| Region | Start | End |
| gene | 142725 | 149185 |
| mRNA | 142725 | 149185 |
| exon | 142725 | 142996 |
| exon | 143334 | 143337 |
| exon | 143870 | 144017 |
| exon | 144141 | 144225 |
| exon | 144306 | 144401 |
| exon | 145147 | 145212 |
| exon | 145383 | 145481 |
| exon | 145665 | 145778 |
| exon | 145987 | 146097 |
| exon | 146192 | 146254 |
| exon | 146363 | 146455 |
| exon | 147241 | 147354 |
| exon | 147736 | 147801 |
| exon | 148142 | 149185 |
| CDS | 142934 | 142996 |
| CDS | 143334 | 143337 |
| CDS | 143870 | 144017 |
| CDS | 144141 | 144225 |
| CDS | 144306 | 144401 |
| CDS | 145147 | 145212 |
| CDS | 145383 | 145481 |
| CDS | 145665 | 145778 |
| CDS | 145987 | 146097 |
| CDS | 146192 | 146254 |
| CDS | 146363 | 146455 |
| CDS | 147241 | 147354 |
| CDS | 147736 | 147801 |
| CDS | 148142 | 148261 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001245 | CAAX-box_protein_processing RLK-Pelle_SD-2b (from iTAK) ubiquitin-ubiquitin ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16491.4 | Peptidase_M48_N | 39 | 222 |
| PF01435.17 | Peptidase_M48 | 225 | 406 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004222 | metalloendopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0008233 | peptidase activity |
| GO:0016020 | membrane |
| GO:0071586 | CAAX-box protein processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.