PH01000511G0150's details annotation
1.Annotation
ICBR annotation: eukaryotic aspartyl protease domain containing protein, expressed
Blast result AT4G35880 : 2.10E-62
Blast annotation: Eukaryotic aspartyl protease family protein
2.Location
Scaffold: PH01000511
Strand: +
| Region | Start | End |
| gene | 93716 | 97662 |
| mRNA | 93716 | 97662 |
| exon | 93716 | 94112 |
| exon | 94258 | 94390 |
| exon | 94898 | 95133 |
| exon | 95205 | 95429 |
| exon | 95509 | 95644 |
| exon | 95727 | 95800 |
| exon | 95893 | 95992 |
| exon | 96079 | 96136 |
| exon | 96881 | 97662 |
| CDS | 93838 | 94112 |
| CDS | 94258 | 94390 |
| CDS | 94898 | 95133 |
| CDS | 95205 | 95429 |
| CDS | 95509 | 95644 |
| CDS | 95727 | 95800 |
| CDS | 95893 | 95992 |
| CDS | 96079 | 96136 |
| CDS | 96881 | 97110 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00026.22 | Asp | 9 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.