Annotation of co-expression genes

PH01000511G0210's details annotation

1.Annotation

ICBR annotation: 26S proteasome non-ATPase regulatory subunit 3, putative, expressed

Blast result AT1G20200 : 8.00E-149
Blast annotation: PAM domain (PCI/PINT associated module) protein

2.Location

Scaffold: PH01000511
Strand: +

RegionStartEnd
gene112918117463
mRNA112918117463
exon112918113076
exon113197113387
exon114086114223
exon114291114427
exon114592114646
exon114738114848
exon115186115322
exon115462115516
exon115608115718
exon115920116159
exon116239117463
CDS112986113076
CDS113197113387
CDS114086114223
CDS114291114427
CDS114592114646
CDS114738114848
CDS115186115322
CDS115462115516
CDS115608115718
CDS115920116159
CDS116239116751

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01399.26PCI416521
PF08375.10Rpn3_C525591

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Proteasome26S proteasome regulatory subunit N3ko03051K03033

10.Gene Ontology

GO AccessionGO Annotation
GO:0000502proteasome complex
GO:0005515protein binding
GO:0030234enzyme regulator activity
GO:0042176regulation of protein catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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