PH01000511G1000's details annotation
1.Annotation
ICBR annotation: dehydrogenase/reductase, putative, expressed
Blast result AT5G50700 : 2.80E-88
Blast annotation: hydroxysteroid dehydrogenase 1
2.Location
Scaffold: PH01000511
Strand: +
| Region | Start | End |
| gene | 604381 | 608123 |
| mRNA | 604381 | 608123 |
| exon | 604381 | 606252 |
| exon | 606381 | 606573 |
| exon | 606668 | 606753 |
| exon | 607201 | 607332 |
| exon | 607443 | 607607 |
| exon | 607760 | 608123 |
| CDS | 606013 | 606252 |
| CDS | 606381 | 606573 |
| CDS | 606668 | 606753 |
| CDS | 607201 | 607332 |
| CDS | 607443 | 607607 |
| CDS | 607760 | 608050 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 67 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.