PH01000513G0710's details annotation
1.Annotation
ICBR annotation: RMD5 homolog A, putative, expressed
Blast result AT4G37880 : 2.00E-114
Blast annotation: LisH/CRA/RING-U-box domains-containing protein
2.Location
Scaffold: PH01000513
Strand: +
| Region | Start | End |
| gene | 534430 | 536820 |
| mRNA | 534430 | 536820 |
| exon | 534430 | 536820 |
| CDS | 534874 | 536034 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001623 | Ribosome_biogenesis_in_eukaryotes ribosome biogenesis, GTP binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10607.8 | CLTH | 151 | 291 |
| PF13445.5 | zf-RING_UBOX | 329 | 370 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.