PH01000516G0330's details annotation
1.Annotation
ICBR annotation: outer mitochondrial membrane porin, putative, expressed
Blast result AT5G67500 : 4.30E-91
Blast annotation: voltage dependent anion channel 2
2.Location
Scaffold: PH01000516
Strand: +
| Region | Start | End |
| gene | 296566 | 298385 |
| mRNA | 296566 | 298385 |
| exon | 296566 | 297176 |
| exon | 297297 | 297364 |
| exon | 297844 | 298385 |
| CDS | 297131 | 297176 |
| CDS | 297297 | 297364 |
| CDS | 297844 | 297936 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01459.21 | Porin_3 | 4 | 268 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005741 | mitochondrial outer membrane |
| GO:0006820 | anion transport |
| GO:0008308 | voltage-gated anion channel activity |
| GO:0044070 | regulation of anion transport |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.