PH01000523G0560's details annotation
1.Annotation
ICBR annotation: Brix domain containing protein, putative, expressed
Blast result AT3G23620 : 3.00E-114
Blast annotation: Ribosomal RNA processing Brix domain protein
2.Location
Scaffold: PH01000523
Strand: +
| Region | Start | End |
| gene | 412532 | 416541 |
| mRNA | 412532 | 416541 |
| exon | 412532 | 412714 |
| exon | 414177 | 414380 |
| exon | 414860 | 415105 |
| exon | 415189 | 415428 |
| exon | 415601 | 415666 |
| exon | 415754 | 416541 |
| CDS | 412646 | 412714 |
| CDS | 414177 | 414380 |
| CDS | 414860 | 415105 |
| CDS | 415189 | 415428 |
| CDS | 415601 | 415666 |
| CDS | 415754 | 415861 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000179 | Ribosome_biogenesis_in_eukaryotes aspartyl-tRNA aminoacylation, aspartate-tRNA ligase activity, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04427.17 | Brix | 35 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.