PH01000528G0920's details annotation
1.Annotation
ICBR annotation: B3 DNA binding domain containing protein, expressed
Blast result AT5G58280 : 3.10E-40
Blast annotation: AP2/B3-like transcriptional factor family protein
2.Location
Scaffold: PH01000528
Strand: +
| Region | Start | End |
| gene | 544404 | 548810 |
| mRNA | 544404 | 548810 |
| exon | 544404 | 546146 |
| exon | 546569 | 546628 |
| exon | 546706 | 546804 |
| exon | 546908 | 546990 |
| exon | 547572 | 547710 |
| exon | 547843 | 548049 |
| exon | 548492 | 548810 |
| CDS | 546084 | 546146 |
| CDS | 546569 | 546628 |
| CDS | 546706 | 546804 |
| CDS | 546908 | 546990 |
| CDS | 547572 | 547710 |
| CDS | 547843 | 548049 |
| CDS | 548492 | 548686 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3 |
| Transcription_Regulator(from PlantTFDB) | B3 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 137 | 224 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.