PH01000529G0230's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT3G20860 : 5.00E-116
Blast annotation: NIMA-related kinase 5
2.Location
Scaffold: PH01000529
Strand: +
| Region | Start | End |
| gene | 192688 | 196775 |
| mRNA | 192688 | 196775 |
| exon | 192688 | 193206 |
| exon | 193333 | 193399 |
| exon | 193709 | 193774 |
| exon | 193877 | 193923 |
| exon | 194006 | 194051 |
| exon | 194197 | 194277 |
| exon | 194360 | 194402 |
| exon | 194504 | 194550 |
| exon | 194925 | 195006 |
| exon | 195116 | 195165 |
| exon | 195263 | 195336 |
| exon | 195413 | 195464 |
| exon | 195552 | 196775 |
| CDS | 193121 | 193206 |
| CDS | 193333 | 193399 |
| CDS | 193709 | 193774 |
| CDS | 193877 | 193923 |
| CDS | 194006 | 194051 |
| CDS | 194197 | 194277 |
| CDS | 194360 | 194402 |
| CDS | 194504 | 194550 |
| CDS | 194925 | 195006 |
| CDS | 195116 | 195165 |
| CDS | 195263 | 195336 |
| CDS | 195413 | 195464 |
| CDS | 195552 | 196403 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 4 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.