PH01000531G0510's details annotation
1.Annotation
ICBR annotation: DUF647 domain containing protein, putative, expressed
Blast result AT1G13770 : 1.60E-86
Blast annotation: Protein of unknown function, DUF647
2.Location
Scaffold: PH01000531
Strand: -
| Region | Start | End |
| gene | 300291 | 310134 |
| mRNA | 300291 | 310134 |
| exon | 300291 | 300395 |
| exon | 300663 | 300850 |
| exon | 301613 | 301705 |
| exon | 302366 | 302495 |
| exon | 302578 | 302660 |
| exon | 302754 | 302837 |
| exon | 303270 | 303333 |
| exon | 303473 | 303529 |
| exon | 303949 | 304011 |
| exon | 304247 | 304306 |
| exon | 307419 | 307464 |
| exon | 308611 | 308666 |
| exon | 309041 | 309156 |
| exon | 309884 | 310134 |
| CDS | 300321 | 300395 |
| CDS | 300663 | 300850 |
| CDS | 301613 | 301705 |
| CDS | 302366 | 302495 |
| CDS | 302578 | 302660 |
| CDS | 302754 | 302837 |
| CDS | 303270 | 303333 |
| CDS | 303473 | 303529 |
| CDS | 303949 | 304011 |
| CDS | 304247 | 304306 |
| CDS | 307419 | 307464 |
| CDS | 308611 | 308666 |
| CDS | 309041 | 309156 |
| CDS | 309884 | 309968 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 29 | 62 |
| PF04884.13 | DUF647 | 102 | 310 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.