PH01000532G0920's details annotation
1.Annotation
ICBR annotation: HVA22, putative, expressed
Blast result AT1G75700 : 3.20E-60
Blast annotation: HVA22-like protein G
2.Location
Scaffold: PH01000532
Strand: +
| Region | Start | End |
| gene | 580637 | 583347 |
| mRNA | 580637 | 583347 |
| exon | 580637 | 580727 |
| exon | 581074 | 581251 |
| exon | 581481 | 581525 |
| exon | 582459 | 582557 |
| exon | 582657 | 582713 |
| exon | 582801 | 582864 |
| exon | 582949 | 583347 |
| CDS | 580718 | 580727 |
| CDS | 581074 | 581251 |
| CDS | 581481 | 581525 |
| CDS | 582459 | 582557 |
| CDS | 582657 | 582713 |
| CDS | 582801 | 582864 |
| CDS | 582949 | 583242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03134.18 | TB2_DP1_HVA22 | 86 | 164 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.