PH01000542G0710's details annotation
1.Annotation
ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed
Blast result AT5G58270 : 4.00E-102
Blast annotation: ABC transporter of the mitochondrion 3
2.Location
Scaffold: PH01000542
Strand: +
| Region | Start | End |
| gene | 522655 | 530318 |
| mRNA | 522655 | 530318 |
| exon | 522655 | 523823 |
| exon | 524554 | 524949 |
| exon | 525362 | 525413 |
| exon | 525881 | 525992 |
| exon | 526763 | 526840 |
| exon | 526880 | 526935 |
| exon | 527061 | 527141 |
| exon | 527466 | 527531 |
| exon | 527614 | 527706 |
| exon | 527815 | 527879 |
| exon | 528651 | 528786 |
| exon | 529091 | 530318 |
| CDS | 523693 | 523823 |
| CDS | 524554 | 524949 |
| CDS | 525362 | 525413 |
| CDS | 525881 | 525992 |
| CDS | 526763 | 526840 |
| CDS | 526880 | 526935 |
| CDS | 527061 | 527141 |
| CDS | 527466 | 527531 |
| CDS | 527614 | 527706 |
| CDS | 527815 | 527879 |
| CDS | 528651 | 528786 |
| CDS | 529091 | 529234 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00005.26 | ABC_tran | 256 | 384 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0016887 | ATPase activity |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.