PH01000543G0200's details annotation
1.Annotation
ICBR annotation: CCR4-NOT transcription factor, putative, expressed
Blast result AT5G59710 : 4.00E-124
Blast annotation: VIRE2 interacting protein 2
2.Location
Scaffold: PH01000543
Strand: +
| Region | Start | End |
| gene | 134968 | 145350 |
| mRNA | 134968 | 145350 |
| exon | 134968 | 136280 |
| exon | 136470 | 136830 |
| exon | 137834 | 138040 |
| exon | 138114 | 138215 |
| exon | 139997 | 140166 |
| exon | 141332 | 141409 |
| exon | 141585 | 142016 |
| exon | 142270 | 142337 |
| exon | 142968 | 143009 |
| exon | 143719 | 143863 |
| exon | 144685 | 145350 |
| CDS | 136155 | 136280 |
| CDS | 136470 | 136830 |
| CDS | 137834 | 138040 |
| CDS | 138114 | 138215 |
| CDS | 139997 | 140166 |
| CDS | 141332 | 141409 |
| CDS | 141585 | 142016 |
| CDS | 142270 | 142337 |
| CDS | 142968 | 143009 |
| CDS | 143719 | 143863 |
| CDS | 144685 | 144795 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04153.17 | NOT2_3_5 | 460 | 578 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.