PH01000543G0780's details annotation
1.Annotation
ICBR annotation: OsSub24 - Putative Subtilisin homologue, expressed
Blast result AT3G14067 : 2.00E-114
Blast annotation: Subtilase family protein
2.Location
Scaffold: PH01000543
Strand: -
| Region | Start | End |
| gene | 510549 | 513212 |
| mRNA | 510549 | 513212 |
| exon | 510549 | 511637 |
| exon | 511811 | 512243 |
| exon | 512276 | 512985 |
| exon | 513060 | 513212 |
| CDS | 510721 | 511637 |
| CDS | 511811 | 512243 |
| CDS | 512276 | 512985 |
| CDS | 513060 | 513183 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05922.15 | Inhibitor_I9 | 30 | 108 |
| PF00082.21 | Peptidase_S8 | 133 | 514 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0042802 | identical protein binding |
| GO:0043086 | negative regulation of catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.