Annotation of co-expression genes

PH01000548G0370's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G36730 : 1.00E-133
Blast annotation: Translation initiation factor IF2/IF5

2.Location

Scaffold: PH01000548
Strand: +

RegionStartEnd
gene248819253748
mRNA248819253748
exon248819251353
exon252130252199
exon252524253254
exon253455253748
CDS249954251353
CDS252130252199
CDS252524253254
CDS253455253734

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000217glycerol ether metabolic process,
RNA-dependent DNA replication,
translational initiation,
RNA metabolic process,
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01873.16eIF-5_eIF-2B11127
PF02020.17W2390467
PF08284.10RVP_2499606
PF00078.26RVT_1743826

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transporttranslation initiation factor 5ko03013K03262

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0003964RNA-directed DNA polymerase activity
GO:0005488binding
GO:0005515protein binding
GO:0006278RNA-dependent DNA replication
GO:0006413translational initiation
GO:0016070RNA metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.