Annotation of co-expression genes

PH01000548G0690's details annotation

1.Annotation

ICBR annotation: arginine N-methyltransferase 5, putative, expressed

Blast result AT4G31120 : 1.40E-98
Blast annotation: SHK1 binding protein 1

2.Location

Scaffold: PH01000548
Strand: +

RegionStartEnd
gene475734482409
mRNA475734482409
exon475734478046
exon478133478339
exon478905478979
exon479093479181
exon479304479352
exon479487479573
exon479735479816
exon480120480214
exon480310480345
exon480488480556
exon481962482409
CDS477903478046
CDS478133478339
CDS478905478979
CDS479093479181
CDS479304479352
CDS479487479573
CDS479735479816
CDS480120480214
CDS480310480345
CDS480488480556
CDS481962482012

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001582cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF17285.1PRMT5_TIM116265
PF05185.15PRMT5271311

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006479protein methylation
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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