PH01000562G0520's details annotation
1.Annotation
ICBR annotation: OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed
Blast result AT3G58500 : 2.90E-78
Blast annotation: protein phosphatase 2A-4
2.Location
Scaffold: PH01000562
Strand: +
| Region | Start | End |
| gene | 379181 | 383335 |
| mRNA | 379181 | 383335 |
| exon | 379181 | 381026 |
| exon | 381578 | 381634 |
| exon | 382506 | 382589 |
| exon | 382699 | 382770 |
| exon | 383099 | 383335 |
| CDS | 380934 | 381026 |
| CDS | 381578 | 381634 |
| CDS | 382506 | 382589 |
| CDS | 382699 | 382770 |
| CDS | 383099 | 383122 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00149.27 | Metallophos | 55 | 165 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.