PH01000563G0540's details annotation
1.Annotation
ICBR annotation: calcineurin B, putative, expressed
Blast result AT5G24270 : 2.10E-46
Blast annotation: Calcium-binding EF-hand family protein
2.Location
Scaffold: PH01000563
Strand: +
| Region | Start | End |
| gene | 333444 | 335692 |
| mRNA | 333444 | 335692 |
| exon | 333444 | 333636 |
| exon | 333690 | 333798 |
| exon | 333949 | 334001 |
| exon | 334876 | 334956 |
| exon | 335072 | 335184 |
| exon | 335418 | 335692 |
| CDS | 333547 | 333636 |
| CDS | 333690 | 333798 |
| CDS | 333949 | 334001 |
| CDS | 334876 | 334956 |
| CDS | 335072 | 335184 |
| CDS | 335418 | 335487 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13202.5 | EF-hand_5 | 30 | 50 |
| PF13499.5 | EF-hand_7 | 63 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.