PH01000564G0240's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G26450 : 8.80E-16
Blast annotation: -
2.Location
Scaffold: PH01000564
Strand: +
| Region | Start | End |
| gene | 175775 | 181645 |
| mRNA | 175775 | 181645 |
| exon | 175775 | 179740 |
| exon | 180477 | 180657 |
| exon | 180786 | 180834 |
| exon | 181548 | 181645 |
| CDS | 178014 | 179740 |
| CDS | 180477 | 180657 |
| CDS | 180786 | 180834 |
| CDS | 181548 | 181600 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000227 | Valine,_leucine_and_isoleucine_biosynthesis COPII_vesicle_coating intracellular, translational elongation, |
| coexpression network | CFinderM000295 | translation, AGC_RSK-2 (from iTAK) CMGC_GSK (from iTAK) Ribosome intracellular, protein phosphorylation, |
| coexpression network | CFinderM000439 | polygalacturonase activity, nucleosome assembly, |
| coexpression network | CFinderM000558 | Whirly Transcription_Regulator(from PlantTFDB) COPII_vesicle_coating aminoacyl-tRNA hydrolase activity, intracellular, |
| coexpression network | CFinderM000754 | Ribosome outer membrane, proteasome core complex, alpha-subunit complex, structural constituent of ribosome, threonine-type endopeptidase activity, endopeptidase activity, translation, intracellular, proteasome core complex, Proteasome proteolysis involved in cellular protein catabolic process, |
| coexpression network | CFinderM001171 | COPII_vesicle_coating |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.