PH01000564G0290's details annotation
1.Annotation
ICBR annotation: Leucine Rich Repeat family protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000564
Strand: +
| Region | Start | End |
| gene | 212200 | 224608 |
| mRNA | 212200 | 224608 |
| exon | 212200 | 214041 |
| exon | 214969 | 215239 |
| exon | 215479 | 215579 |
| exon | 217846 | 217917 |
| exon | 219892 | 223064 |
| exon | 223504 | 224608 |
| CDS | 214015 | 214041 |
| CDS | 214969 | 215239 |
| CDS | 215479 | 215579 |
| CDS | 217846 | 217917 |
| CDS | 219892 | 223064 |
| CDS | 223504 | 223561 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.