Annotation of co-expression genes

PH01000566G0380's details annotation

1.Annotation

ICBR annotation: AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed

Blast result AT2G20050 : 2.70E-66
Blast annotation: protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases

2.Location

Scaffold: PH01000566
Strand: -

RegionStartEnd
gene267095270159
mRNA267095270159
exon267095267549
exon267657267813
exon268214268401
exon268534268568
exon268929268995
exon269104269182
exon269269269579
exon269692269923
exon270006270159
CDS267304267549
CDS267657267813
CDS268214268401
CDS268534268568
CDS268929268995
CDS269104269182
CDS269269269579
CDS269692269923
CDS270006270016

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00027.28cNMP_binding70173
PF00069.24Pkinase235384

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.