Annotation of co-expression genes

PH01000569G0500's details annotation

1.Annotation

ICBR annotation: eukaryotic aspartyl protease domain containing protein, expressed

Blast result AT1G49050 : 4.20E-82
Blast annotation: Eukaryotic aspartyl protease family protein

2.Location

Scaffold: PH01000569
Strand: -

RegionStartEnd
gene349906353867
mRNA349906353867
exon349906350038
exon350162350234
exon350347350461
exon350569350651
exon350816350882
exon351025351261
exon351363351586
exon352032353867
CDS349926350038
CDS350162350234
CDS350347350461
CDS350569350651
CDS350816350882
CDS351025351261
CDS351363351586
CDS352032352130

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001656GH43 Glycoside_Hydrolases
TKL-Pl-6 (from iTAK)
GH35 Glycoside_Hydrolases
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
coexpression networkCFinderM001657Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
phosphatidylinositol metabolic process,
Phagosome
cellular protein metabolic process,
phosphatidylinositol phosphate kinase activity,
aspartic-type endopeptidase activity,
GH35 Glycoside_Hydrolases
phospholipid transport,
proteolysis,
metal ion binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14543.5TAXi_N32169
PF14541.5TAXi_C262320

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004190aspartic-type endopeptidase activity
GO:0006508proteolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.