PH01000576G0260's details annotation
1.Annotation
ICBR annotation: Protein-tyrosine phosphatase domain containing protein, expressed
Blast result AT1G71860 : 4.20E-72
Blast annotation: protein tyrosine phosphatase 1
2.Location
Scaffold: PH01000576
Strand: -
| Region | Start | End |
| gene | 156766 | 166222 |
| mRNA | 156766 | 166222 |
| exon | 156766 | 156992 |
| exon | 157351 | 157435 |
| exon | 157650 | 157700 |
| exon | 158133 | 158274 |
| exon | 158357 | 158499 |
| exon | 159299 | 159421 |
| exon | 160141 | 160284 |
| exon | 160368 | 160450 |
| exon | 160546 | 160639 |
| exon | 162710 | 162972 |
| exon | 164444 | 166222 |
| CDS | 156868 | 156992 |
| CDS | 157351 | 157435 |
| CDS | 157650 | 157700 |
| CDS | 158133 | 158274 |
| CDS | 158357 | 158499 |
| CDS | 159299 | 159421 |
| CDS | 160141 | 160284 |
| CDS | 160368 | 160450 |
| CDS | 160546 | 160639 |
| CDS | 162710 | 162972 |
| CDS | 164444 | 164510 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00102.26 | Y_phosphatase | 130 | 364 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
| GO:0016311 | dephosphorylation |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.