PH01000577G0020's details annotation
1.Annotation
ICBR annotation: OsRhmbd12 - Putative Rhomboid homologue, expressed
Blast result AT5G25752 : 6.40E-83
Blast annotation: rhomboid-like protein 11
2.Location
Scaffold: PH01000577
Strand: -
| Region | Start | End |
| gene | 6611 | 8998 |
| mRNA | 6611 | 8998 |
| exon | 6611 | 6977 |
| exon | 7375 | 7437 |
| exon | 7535 | 7701 |
| exon | 7786 | 7826 |
| exon | 8018 | 8103 |
| exon | 8537 | 8655 |
| exon | 8764 | 8998 |
| CDS | 6804 | 6977 |
| CDS | 7375 | 7437 |
| CDS | 7535 | 7701 |
| CDS | 7786 | 7826 |
| CDS | 8018 | 8103 |
| CDS | 8537 | 8655 |
| CDS | 8764 | 8947 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000793 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01694.21 | Rhomboid | 117 | 258 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.