PH01000581G0860's details annotation
1.Annotation
ICBR annotation: polyprenyl synthetase, putative, expressed
Blast result AT4G17190 : 1.30E-55
Blast annotation: farnesyl diphosphate synthase 2
2.Location
Scaffold: PH01000581
Strand: -
| Region | Start | End |
| gene | 617136 | 621143 |
| mRNA | 617136 | 621143 |
| exon | 617136 | 617370 |
| exon | 617660 | 617731 |
| exon | 617812 | 617901 |
| exon | 617972 | 618016 |
| exon | 619153 | 619204 |
| exon | 619316 | 619404 |
| exon | 619694 | 619810 |
| exon | 620212 | 620282 |
| exon | 620942 | 621143 |
| CDS | 617359 | 617370 |
| CDS | 617660 | 617731 |
| CDS | 617812 | 617901 |
| CDS | 617972 | 618016 |
| CDS | 619153 | 619204 |
| CDS | 619316 | 619404 |
| CDS | 619694 | 619810 |
| CDS | 620212 | 620282 |
| CDS | 620942 | 621143 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000061 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00348.16 | polyprenyl_synt | 175 | 243 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008299 | isoprenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.