PH01000584G0520's details annotation
1.Annotation
ICBR annotation: ribosomal protein L5, putative, expressed
Blast result AT5G45775 : 2.70E-58
Blast annotation: Ribosomal L5P family protein
2.Location
Scaffold: PH01000584
Strand: +
| Region | Start | End |
| gene | 368896 | 374202 |
| mRNA | 368896 | 374202 |
| exon | 368896 | 370304 |
| exon | 372678 | 372785 |
| exon | 372883 | 372925 |
| exon | 373026 | 374202 |
| CDS | 370110 | 370304 |
| CDS | 372678 | 372785 |
| CDS | 372883 | 372925 |
| CDS | 373026 | 373225 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00281.18 | Ribosomal_L5 | 73 | 126 |
| PF00673.20 | Ribosomal_L5_C | 130 | 180 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.