PH01000585G0800's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G40450 : 6.50E-45
Blast annotation: -
2.Location
Scaffold: PH01000585
Strand: -
| Region | Start | End |
| gene | 539115 | 563416 |
| mRNA | 539115 | 563416 |
| exon | 539115 | 541692 |
| exon | 541776 | 542105 |
| exon | 542380 | 542466 |
| exon | 542784 | 542828 |
| exon | 542950 | 543234 |
| exon | 543333 | 543965 |
| exon | 545390 | 546730 |
| exon | 547123 | 548328 |
| exon | 549391 | 549564 |
| exon | 549814 | 550335 |
| exon | 550419 | 550748 |
| exon | 551010 | 551096 |
| exon | 551414 | 551458 |
| exon | 551580 | 551864 |
| exon | 551963 | 552550 |
| exon | 553039 | 553101 |
| exon | 554383 | 554667 |
| exon | 555115 | 556965 |
| exon | 557204 | 557428 |
| exon | 557926 | 559742 |
| exon | 559886 | 561053 |
| exon | 562477 | 562549 |
| exon | 562867 | 563416 |
| CDS | 539638 | 541692 |
| CDS | 541776 | 542105 |
| CDS | 542380 | 542466 |
| CDS | 542784 | 542828 |
| CDS | 542950 | 543234 |
| CDS | 543333 | 543965 |
| CDS | 545390 | 546730 |
| CDS | 547123 | 548328 |
| CDS | 549391 | 549564 |
| CDS | 549814 | 550335 |
| CDS | 550419 | 550748 |
| CDS | 551010 | 551096 |
| CDS | 551414 | 551458 |
| CDS | 551580 | 551864 |
| CDS | 551963 | 552550 |
| CDS | 553039 | 553101 |
| CDS | 554383 | 554667 |
| CDS | 555115 | 556965 |
| CDS | 557204 | 557428 |
| CDS | 557926 | 559742 |
| CDS | 559886 | 561053 |
| CDS | 562477 | 562549 |
| CDS | 562867 | 562994 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000643 | defense response, RLK-Pelle_DLSV (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.