PH01000591G0710's details annotation
1.Annotation
ICBR annotation: tim44-like domain containing protein
Blast result AT5G27395 : 5.50E-63
Blast annotation: Mitochondrial inner membrane translocase complex, subunit Tim44-related protein
2.Location
Scaffold: PH01000591
Strand: +
| Region | Start | End |
| gene | 415821 | 423885 |
| mRNA | 415821 | 423885 |
| exon | 415821 | 416217 |
| exon | 416295 | 416356 |
| exon | 416453 | 416532 |
| exon | 416635 | 416730 |
| exon | 416813 | 416895 |
| exon | 419057 | 419108 |
| exon | 419732 | 419824 |
| exon | 421140 | 421208 |
| exon | 421302 | 421403 |
| exon | 421476 | 421481 |
| exon | 421613 | 421681 |
| exon | 422501 | 422557 |
| exon | 422720 | 423885 |
| CDS | 416141 | 416217 |
| CDS | 416295 | 416356 |
| CDS | 416453 | 416532 |
| CDS | 416635 | 416730 |
| CDS | 416813 | 416895 |
| CDS | 419057 | 419108 |
| CDS | 419732 | 419824 |
| CDS | 421140 | 421208 |
| CDS | 421302 | 421403 |
| CDS | 421476 | 421481 |
| CDS | 421613 | 421681 |
| CDS | 422501 | 422557 |
| CDS | 422720 | 422737 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001633 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
| coexpression network | CFinderM001852 | calcium-dependent phospholipid binding, single-stranded DNA binding, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04280.14 | Tim44 | 162 | 282 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.