PH01000592G0190's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G24460 : 2.00E-43
Blast annotation: Serinc-domain containing serine and sphingolipid biosynthesis protein
2.Location
Scaffold: PH01000592
Strand: +
| Region | Start | End |
| gene | 127151 | 130865 |
| mRNA | 127151 | 130865 |
| exon | 127151 | 127714 |
| exon | 127876 | 128047 |
| exon | 128157 | 128181 |
| exon | 128231 | 128360 |
| exon | 128810 | 128981 |
| exon | 129077 | 129150 |
| exon | 129488 | 129559 |
| exon | 129640 | 129773 |
| exon | 129908 | 129981 |
| exon | 130134 | 130865 |
| CDS | 127472 | 127714 |
| CDS | 127876 | 128047 |
| CDS | 128157 | 128181 |
| CDS | 128231 | 128360 |
| CDS | 128810 | 128981 |
| CDS | 129077 | 129150 |
| CDS | 129488 | 129559 |
| CDS | 129640 | 129773 |
| CDS | 129908 | 129981 |
| CDS | 130134 | 130183 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03348.14 | Serinc | 34 | 147 |
| PF03348.14 | Serinc | 299 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.