PH01000596G0140's details annotation
1.Annotation
ICBR annotation: peptidase, M24 family protein, putative, expressed
Blast result AT4G36760 : 1.00E-123
Blast annotation: aminopeptidase P1
2.Location
Scaffold: PH01000596
Strand: +
| Region | Start | End |
| gene | 85028 | 92625 |
| mRNA | 85028 | 92625 |
| exon | 85028 | 86816 |
| exon | 87925 | 87988 |
| exon | 88556 | 88690 |
| exon | 88779 | 88859 |
| exon | 89675 | 89729 |
| exon | 90993 | 91097 |
| exon | 91196 | 91267 |
| exon | 91414 | 91538 |
| exon | 92247 | 92625 |
| CDS | 86314 | 86816 |
| CDS | 87925 | 87988 |
| CDS | 88556 | 88690 |
| CDS | 88779 | 88859 |
| CDS | 89675 | 89729 |
| CDS | 90993 | 91097 |
| CDS | 91196 | 91267 |
| CDS | 91414 | 91538 |
| CDS | 92247 | 92414 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000774 | GH47 Glycoside_Hydrolases membrane, ion transport, cellular process, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00557.23 | Peptidase_M24 | 171 | 360 |
| PF16188.4 | Peptidase_M24_C | 372 | 431 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009987 | cellular process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.