Annotation of co-expression genes

PH01000597G0630's details annotation

1.Annotation

ICBR annotation: sodium/calcium exchanger protein, putative, expressed

Blast result AT3G13320 : 1.00E-161
Blast annotation: cation exchanger 2

2.Location

Scaffold: PH01000597
Strand: -

RegionStartEnd
gene461520467982
mRNA461520467982
exon461520462336
exon463323463416
exon463982464098
exon464286464339
exon464425464541
exon464872465006
exon465275465487
exon465566465762
exon465853465881
exon465951466018
exon466322467982
CDS462326462336
CDS463323463416
CDS463982464098
CDS464286464339
CDS464425464541
CDS464872465006
CDS465275465487
CDS465566465762
CDS465853465881
CDS465951466018
CDS466322466522

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01699.23Na_Ca_ex69224
PF01699.23Na_Ca_ex261398

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006812cation transport
GO:0006816calcium ion transport
GO:0008324cation transmembrane transporter activity
GO:0015369calcium:hydrogen antiporter activity
GO:0016021integral to membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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