Annotation of co-expression genes

PH01000598G0880's details annotation

1.Annotation

ICBR annotation: polyadenylate-binding protein, putative, expressed

Blast result AT4G34110 : 0
Blast annotation: poly(A) binding protein 2

2.Location

Scaffold: PH01000598
Strand: +

RegionStartEnd
gene569277576424
mRNA569277576424
exon569277570491
exon571416571534
exon571636572304
exon572396572473
exon572546572635
exon573153573287
exon574384574461
exon574759574965
exon575236576424
CDS570233570491
CDS571416571534
CDS571636572304
CDS572396572473
CDS572546572635
CDS573153573287
CDS574384574461
CDS574759574965
CDS575236575481

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_135105
PF00076.21RRM_1123191
PF00076.21RRM_1214286
PF00076.21RRM_1321389
PF00658.17PABP533599

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transportpolyadenylate-binding proteinko03013K13126
mRNA surveillance pathwaypolyadenylate-binding proteinko03015K13126
RNA degradationpolyadenylate-binding proteinko03018K13126

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003723RNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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