PH01000599G0060's details annotation
1.Annotation
ICBR annotation: PHD finger protein, putative, expressed
Blast result AT1G14510 : 1.00E-83
Blast annotation: alfin-like 7
2.Location
Scaffold: PH01000599
Strand: -
| Region | Start | End |
| gene | 33580 | 35199 |
| mRNA | 33580 | 35199 |
| exon | 33580 | 33905 |
| exon | 33997 | 34123 |
| exon | 35042 | 35199 |
| CDS | 33621 | 33905 |
| CDS | 33997 | 34123 |
| CDS | 35042 | 35112 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Alfin-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12165.7 | Alfin | 9 | 136 |
| PF00628.28 | PHD | 199 | 247 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.