PH01000614G0220's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT1G64790 : 0.00E+00
Blast annotation: ILITYHIA
2.Location
Scaffold: PH01000614
Strand: -
| Region | Start | End |
| gene | 139759 | 152690 |
| mRNA | 139759 | 152690 |
| exon | 139759 | 140065 |
| exon | 140214 | 140298 |
| exon | 140497 | 140629 |
| exon | 140716 | 140883 |
| exon | 140963 | 141157 |
| exon | 142088 | 142214 |
| exon | 142521 | 142679 |
| exon | 143479 | 143591 |
| exon | 143802 | 143873 |
| exon | 143996 | 144118 |
| exon | 144193 | 144330 |
| exon | 144435 | 144545 |
| exon | 146501 | 146615 |
| exon | 146836 | 146942 |
| exon | 147019 | 147070 |
| exon | 147140 | 147246 |
| exon | 147593 | 147646 |
| exon | 147818 | 147931 |
| exon | 148025 | 148147 |
| exon | 148305 | 148475 |
| exon | 148560 | 148662 |
| exon | 148749 | 148827 |
| exon | 148894 | 148963 |
| exon | 149055 | 149165 |
| exon | 149589 | 149762 |
| exon | 149813 | 149860 |
| exon | 149906 | 150097 |
| exon | 150219 | 150329 |
| exon | 150408 | 150464 |
| exon | 150553 | 150675 |
| exon | 152032 | 152282 |
| exon | 152359 | 152690 |
| CDS | 140026 | 140065 |
| CDS | 140214 | 140298 |
| CDS | 140497 | 140629 |
| CDS | 140716 | 140883 |
| CDS | 140963 | 141157 |
| CDS | 142088 | 142214 |
| CDS | 142521 | 142679 |
| CDS | 143479 | 143591 |
| CDS | 143802 | 143873 |
| CDS | 143996 | 144118 |
| CDS | 144193 | 144330 |
| CDS | 144435 | 144545 |
| CDS | 146501 | 146615 |
| CDS | 146836 | 146942 |
| CDS | 147019 | 147070 |
| CDS | 147140 | 147246 |
| CDS | 147593 | 147646 |
| CDS | 147818 | 147931 |
| CDS | 148025 | 148147 |
| CDS | 148305 | 148475 |
| CDS | 148560 | 148662 |
| CDS | 148749 | 148827 |
| CDS | 148894 | 148963 |
| CDS | 149055 | 149165 |
| CDS | 149589 | 149762 |
| CDS | 149813 | 149860 |
| CDS | 149906 | 150097 |
| CDS | 150219 | 150329 |
| CDS | 150408 | 150464 |
| CDS | 150553 | 150675 |
| CDS | 152032 | 152282 |
| CDS | 152359 | 152575 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001717 | CBM49 Carbohydrate-Binding_Modules GH9 Glycoside_Hydrolases lysyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis membrane coat, lysine-tRNA ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07727.13 | RVT_2 | 2 | 72 |
| PF07727.13 | RVT_2 | 73 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.