Annotation of co-expression genes

PH01000617G0920's details annotation

1.Annotation

ICBR annotation: xaa-Pro aminopeptidase, putative, expressed

Blast result AT1G09300 : 1.80E-69
Blast annotation: Metallopeptidase M24 family protein

2.Location

Scaffold: PH01000617
Strand: -

RegionStartEnd
gene577665588361
mRNA577665588361
exon577665578585
exon581186581409
exon582102582192
exon582305582406
exon582856583113
exon583436583582
exon583617583683
exon583944584035
exon584730584936
exon585238585444
exon585614585706
exon585789586052
exon587031587138
exon588090588361
CDS578133578585
CDS581186581409
CDS582102582192
CDS582305582406
CDS582856583113
CDS583436583582
CDS583617583683
CDS583944584035
CDS584730584936
CDS585238585444
CDS585614585706
CDS585789586052
CDS587031587138
CDS588090588137

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05195.15AMP_N68184
PF00557.23Peptidase_M24299531
PF04398.11DUF538618704

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004177aminopeptidase activity
GO:0009987cellular process
GO:0030145manganese ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.