PH01000618G0370's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase AFC2, putative, expressed
Blast result AT4G24740 : 8.00E-154
Blast annotation: FUS3-complementing gene 2
2.Location
Scaffold: PH01000618
Strand: -
| Region | Start | End |
| gene | 201241 | 206967 |
| mRNA | 201241 | 206967 |
| exon | 201241 | 202415 |
| exon | 202660 | 202762 |
| exon | 202862 | 202959 |
| exon | 203044 | 203108 |
| exon | 203201 | 203336 |
| exon | 203509 | 203600 |
| exon | 204230 | 204344 |
| exon | 204435 | 204483 |
| exon | 204625 | 204778 |
| exon | 204959 | 204985 |
| exon | 205183 | 205207 |
| exon | 205749 | 205799 |
| exon | 206789 | 206967 |
| CDS | 202263 | 202415 |
| CDS | 202660 | 202762 |
| CDS | 202862 | 202959 |
| CDS | 203044 | 203108 |
| CDS | 203201 | 203336 |
| CDS | 203509 | 203600 |
| CDS | 204230 | 204344 |
| CDS | 204435 | 204483 |
| CDS | 204625 | 204778 |
| CDS | 204959 | 204985 |
| CDS | 205183 | 205207 |
| CDS | 205749 | 205799 |
| CDS | 206789 | 206881 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 60 | 377 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.