PH01000622G0300's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT2G16650 : 1.30E-65
Blast annotation: proteinaceous RNase P 2
2.Location
Scaffold: PH01000622
Strand: -
| Region | Start | End |
| gene | 234980 | 238827 |
| mRNA | 234980 | 238827 |
| exon | 234980 | 235949 |
| exon | 236021 | 236089 |
| exon | 236309 | 236429 |
| exon | 236687 | 236910 |
| exon | 236963 | 237064 |
| exon | 237748 | 238827 |
| CDS | 235716 | 235949 |
| CDS | 236021 | 236089 |
| CDS | 236309 | 236429 |
| CDS | 236687 | 236910 |
| CDS | 236963 | 237064 |
| CDS | 237748 | 238398 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17177.3 | PPR_long | 11 | 228 |
| PF16953.4 | PRORP | 268 | 339 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.