Annotation of co-expression genes

PH01000622G0410's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed

Blast result AT1G08200 : 0.00E+00
Blast annotation: UDP-D-apiose/UDP-D-xylose synthase 2

2.Location

Scaffold: PH01000622
Strand: -

RegionStartEnd
gene300311304908
mRNA300311304908
exon300311300963
exon301051301120
exon301241301333
exon301613301783
exon302171302272
exon302364302497
exon302590302704
exon303821303928
exon304410304908
CDS300848300963
CDS301051301120
CDS301241301333
CDS301613301783
CDS302171302272
CDS302364302497
CDS302590302704
CDS303821303928
CDS304410304694

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001716Amino_sugar_and_nucleotide_sugar_metabolism
cellular metabolic process,
GT8 GlycosylTransferases
coenzyme binding,
copper ion transport,
copper-transporting_ATPase_activity
Starch_and_sucrose_metabolism
Ubiquitin_mediated_proteolysis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01370.20Epimerase23274

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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