PH01000622G0770's details annotation
1.Annotation
ICBR annotation: haloacid dehalogenase-like hydrolase family protein, putative, expressed
Blast result AT5G59480 : 5.30E-92
Blast annotation: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
2.Location
Scaffold: PH01000622
Strand: +
| Region | Start | End |
| gene | 578280 | 580534 |
| mRNA | 578280 | 580534 |
| exon | 578280 | 578888 |
| exon | 579001 | 579066 |
| exon | 579166 | 579263 |
| exon | 579365 | 579402 |
| exon | 579497 | 579584 |
| exon | 579663 | 579935 |
| exon | 580029 | 580094 |
| exon | 580204 | 580534 |
| CDS | 578828 | 578888 |
| CDS | 579001 | 579066 |
| CDS | 579166 | 579263 |
| CDS | 579365 | 579402 |
| CDS | 579497 | 579584 |
| CDS | 579663 | 579935 |
| CDS | 580029 | 580094 |
| CDS | 580204 | 580359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13419.5 | HAD_2 | 18 | 161 |
| PF13419.5 | HAD_2 | 188 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.