Annotation of co-expression genes

PH01000623G0070's details annotation

1.Annotation

ICBR annotation: CHIT12 - Chitinase family protein precursor, expressed

Blast result AT1G05850 : 9.00E-121
Blast annotation: Chitinase family protein

2.Location

Scaffold: PH01000623
Strand: +

RegionStartEnd
gene3019732778
mRNA3019732778
exon3019730924
exon3167331829
exon3192632778
CDS3056430924
CDS3167331829
CDS3192632331

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001339chitin catabolic process,
chitinase activity,
cell wall macromolecule catabolic process,
GH19 Glycoside_Hydrolases
coexpression networkCFinderM001628GH19 Glycoside_Hydrolases
transferase activity, transferring pentosyl groups,
chitinase activity,
ER to Golgi vesicle-mediated transport,
chitin catabolic process,
cell wall macromolecule catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH19

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00182.18Glyco_hydro_1959292

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004568chitinase activity
GO:0005975carbohydrate metabolic process
GO:0006032chitin catabolic process
GO:0016998cell wall macromolecule catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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