PH01000623G0110's details annotation
1.Annotation
ICBR annotation: 2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed
Blast result AT5G12860 : 4.30E-63
Blast annotation: dicarboxylate transporter 1
2.Location
Scaffold: PH01000623
Strand: +
| Region | Start | End |
| gene | 52080 | 60342 |
| mRNA | 52080 | 60342 |
| exon | 52080 | 55090 |
| exon | 57856 | 57941 |
| exon | 59188 | 60342 |
| CDS | 54562 | 55090 |
| CDS | 57856 | 57941 |
| CDS | 59188 | 59811 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CSD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00939.18 | Na_sulph_symp | 2 | 180 |
| PF00313.21 | CSD | 211 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
| GO:0005215 | transporter activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0006814 | sodium ion transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.