PH01000623G0500's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G17370 : 5.00E-126
Blast annotation: oligouridylate binding protein 1B
2.Location
Scaffold: PH01000623
Strand: +
| Region | Start | End |
| gene | 316723 | 324126 |
| mRNA | 316723 | 324126 |
| exon | 316723 | 318368 |
| exon | 319435 | 319496 |
| exon | 319797 | 319899 |
| exon | 320258 | 320319 |
| exon | 320611 | 320713 |
| exon | 321070 | 321146 |
| exon | 321919 | 321985 |
| exon | 322332 | 322362 |
| exon | 322486 | 322608 |
| exon | 322792 | 322883 |
| exon | 323058 | 323231 |
| exon | 323323 | 324126 |
| CDS | 318207 | 318368 |
| CDS | 319435 | 319496 |
| CDS | 319797 | 319899 |
| CDS | 320258 | 320319 |
| CDS | 320611 | 320713 |
| CDS | 321070 | 321146 |
| CDS | 321919 | 321985 |
| CDS | 322332 | 322362 |
| CDS | 322486 | 322608 |
| CDS | 322792 | 322883 |
| CDS | 323058 | 323231 |
| CDS | 323323 | 323616 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 75 | 141 |
| PF00076.21 | RRM_1 | 160 | 230 |
| PF00076.21 | RRM_1 | 284 | 349 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.