Gene details

Annotation of co-expression genes

PH01000629G0380's details annotation

1.Annotation

ICBR annotation: pentatricopeptide repeat domain containing protein, putative

Blast result AT4G19440 : 2.00E-105
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01000629
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000885	SNF2 Transcription_Regulator(from iTAK) valyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis valine-tRNA ligase activity, protein binding, aminoacyl-tRNA_editing_activity mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, tRNA aminoacylation for protein translation, cellulose biosynthetic process,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0005515	protein binding
GO:0016020	membrane
GO:0016760	cellulose synthase (UDP-forming) activity
GO:0030244	cellulose biosynthetic process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.