Annotation of co-expression genes

PH01000629G0460's details annotation

1.Annotation

ICBR annotation: adenylate kinase family protein, putative, expressed

Blast result AT5G35170 : 0.00E+00
Blast annotation: adenylate kinase family protein

2.Location

Scaffold: PH01000629
Strand: +

RegionStartEnd
gene324300336449
mRNA324300336449
exon324300325399
exon326081326209
exon326290326424
exon327180327326
exon329177329251
exon330330330422
exon331081331206
exon331462331497
exon331568331648
exon331736331874
exon332190332269
exon332354332419
exon332914332943
exon333025333134
exon333253333390
exon334189334468
exon336041336449
CDS325127325399
CDS326081326209
CDS326290326424
CDS327180327326
CDS329177329251
CDS330330330422
CDS331081331206
CDS331462331497
CDS331568331648
CDS331736331874
CDS332190332269
CDS332354332419
CDS332914332943
CDS333025333134
CDS333253333390
CDS334189334468
CDS336041336274

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00406.21ADK87248
PF09353.9DUF1995303545

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismadenylate kinase [EC:2.7.4.3]ko00230K00939

10.Gene Ontology

GO AccessionGO Annotation
GO:0004017adenylate kinase activity
GO:0005524ATP binding
GO:0006139nucleobase-containing compound metabolic process
GO:0016776phosphotransferase activity, phosphate group as acceptor
GO:0019201nucleotide kinase activity
GO:0019205nucleobase-containing compound kinase activity
GO:0046939nucleotide phosphorylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.