PH01000630G0070's details annotation
1.Annotation
ICBR annotation: OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed
Blast result AT1G77490 : 3.90E-43
Blast annotation: thylakoidal ascorbate peroxidase
2.Location
Scaffold: PH01000630
Strand: +
| Region | Start | End |
| gene | 64673 | 68810 |
| mRNA | 64673 | 68810 |
| exon | 64673 | 66613 |
| exon | 66699 | 66821 |
| exon | 68222 | 68342 |
| exon | 68438 | 68810 |
| CDS | 66440 | 66613 |
| CDS | 66699 | 66821 |
| CDS | 68222 | 68342 |
| CDS | 68438 | 68544 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00141.22 | peroxidase | 83 | 173 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.