PH01000630G0250's details annotation
1.Annotation
ICBR annotation: PHD-finger domain containing protein, expressed
Blast result AT3G14980 : 6.00E-126
Blast annotation: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
2.Location
Scaffold: PH01000630
Strand: +
| Region | Start | End |
| gene | 221213 | 229641 |
| mRNA | 221213 | 229641 |
| exon | 221213 | 226389 |
| exon | 227007 | 227130 |
| exon | 227581 | 227666 |
| exon | 227774 | 228012 |
| exon | 228160 | 228246 |
| exon | 228355 | 228454 |
| exon | 228892 | 229087 |
| exon | 229181 | 229641 |
| CDS | 222868 | 226389 |
| CDS | 227007 | 227130 |
| CDS | 227581 | 227666 |
| CDS | 227774 | 228012 |
| CDS | 228160 | 228246 |
| CDS | 228355 | 228454 |
| CDS | 228892 | 229087 |
| CDS | 229181 | 229494 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16135.4 | Jas | 1036 | 1106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008080 | N-acetyltransferase activity |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.